STRINGSTRING
Psed_0534 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0534" - Alanine racemase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0534Alanine racemase (374 aa)    
Predicted Functional Partners:
Psed_0533
Regulatory protein ArsR (135 aa)
              0.663
Psed_0532
Cation efflux protein (217 aa)
              0.663
Psed_3083
N-acyl-D-amino-acid deacylase (533 aa)
 
          0.608
Psed_6500
Endoribonuclease L-PSP (151 aa)
 
        0.520
Psed_6028
D-lactate dehydrogenase (1050 aa)
              0.519
Psed_5593
D-lactate dehydrogenase (982 aa)
              0.519
Psed_4952
D-lactate dehydrogenase (929 aa)
              0.519
Psed_6135
Endoribonuclease L-PSP (130 aa)
   
        0.439
Psed_0475
Endoribonuclease L-PSP (433 aa)
   
        0.439
Psed_3104
Periplasmic binding protein (294 aa)
 
          0.433
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (10%) [HD]