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Psed_0539 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0539" - RNA-binding S4 domain-containing protein in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0539RNA-binding S4 domain-containing protein (123 aa)    
Predicted Functional Partners:
Psed_0540
3-oxoacyl-ACP reductase (265 aa)
              0.807
Psed_0541
Ethyl tert-butyl ether degradation EthD (111 aa)
              0.805
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor (368 aa)
              0.731
Psed_0543
Dimethylmenaquinone methyltransferase (220 aa)
              0.648
Psed_0542
o-succinylbenzoate--CoA ligase (499 aa)
              0.615
Psed_3483
Molecular chaperone DnaJ (331 aa)
   
      0.533
Psed_4690
DEAD/DEAH box helicase domain-containing protein (504 aa)
     
      0.498
Psed_3068
DEAD/DEAH box helicase domain-containing protein (659 aa)
     
      0.498
Psed_1069
DEAD/DEAH box helicase domain-containing protein (621 aa)
     
      0.498
argG
Argininosuccinate synthase (477 aa)
     
      0.475
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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