STRINGSTRING
Psed_0569 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0569" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0569TetR family transcriptional regulator (206 aa)    
Predicted Functional Partners:
Psed_0568
Monooxygenase FAD-binding protein (517 aa)
 
          0.916
Psed_6620
Esterase (258 aa)
   
          0.549
Psed_4290
Alpha/beta hydrolase (234 aa)
   
          0.525
Psed_0933
Pyridoxamine 5’-phosphate oxidase-related FMN-binding protein (151 aa)
   
          0.501
Psed_5236
TetR family transcriptional regulator (255 aa)
   
          0.450
Psed_3091
Transcriptional activator domain-containing protein (850 aa)
   
          0.437
Psed_4394
Hypothetical protein (234 aa)
   
          0.426
Psed_3175
Hypothetical protein (250 aa)
   
          0.423
Psed_0129
Hypothetical protein (237 aa)
   
          0.415
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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