STRINGSTRING
Psed_0577 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0577" - Regulatory protein MarR in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0577Regulatory protein MarR (162 aa)    
Predicted Functional Partners:
Psed_0578
Cupin (173 aa)
              0.675
Psed_1139
Hypothetical protein (348 aa)
   
          0.644
Psed_1081
Hypothetical protein (326 aa)
   
          0.597
Psed_0579
TetR family transcriptional regulator (205 aa)
              0.573
Psed_0375
TetR family transcriptional regulator (195 aa)
   
          0.571
Psed_0287
Hypothetical protein (198 aa)
   
          0.562
Psed_4522
Hypothetical protein (197 aa)
   
          0.533
Psed_1446
Hypothetical protein (159 aa)
   
          0.453
Psed_6605
Hypothetical protein (204 aa)
   
          0.435
Psed_4531
Hypothetical protein (195 aa)
   
          0.418
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (9%) [HD]