STRINGSTRING
Psed_0625 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0625" - TRAP transporter solute receptor, TAXI family in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0625TRAP transporter solute receptor, TAXI family (333 aa)    
Predicted Functional Partners:
Psed_0621
TRAP transporter, 4TM/12TM fusion protein (653 aa)
          0.981
Psed_0623
o-succinylbenzoate--CoA ligase (497 aa)
              0.820
Psed_0624
Luciferase-like protein (355 aa)
              0.819
Psed_0622
Alpha/beta hydrolase (270 aa)
              0.819
Psed_0620
GntR family transcriptional regulator (247 aa)
              0.776
Psed_0619
Monosaccharide-transporting ATPase (300 aa)
              0.638
Psed_0618
Na+ efflux pump ABC transporter permease (395 aa)
              0.638
Psed_0627
Thiolase (392 aa)
              0.572
Psed_0626
Hypothetical protein (134 aa)
              0.568
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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