STRINGSTRING
Psed_0657 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0657" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0657Hypothetical protein (326 aa)    
Predicted Functional Partners:
Psed_0656
Hypothetical protein (230 aa)
 
          0.972
Psed_0660
anti-sigma-K factor RskA (216 aa)
 
          0.655
Psed_0658
Hypothetical protein (186 aa)
              0.648
Psed_0659
ECF subfamily RNA polymerase sigma-24 subunit (190 aa)
 
          0.582
Psed_0711
Hypothetical protein (197 aa)
   
          0.544
Psed_4354
Rhodanese-like protein (221 aa)
              0.536
Psed_2929
Protein tyrosine phosphatase (166 aa)
 
          0.525
Psed_1407
Hypothetical protein (324 aa)
   
          0.503
Psed_0457
Thioredoxin (144 aa)
 
          0.498
Psed_1956
FhuF/siderophore biosynthesis protein (289 aa)
   
          0.479
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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