STRINGSTRING
Psed_0668 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0668" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0668Hypothetical protein (94 aa)    
Predicted Functional Partners:
Psed_2296
Hypothetical protein (155 aa)
   
          0.698
Psed_5938
Glycoside hydrolase protein (95 aa)
   
          0.640
Psed_4278
Metal dependent phosphohydrolase (187 aa)
   
          0.617
Psed_0670
Hypothetical protein (328 aa)
              0.596
Psed_0669
Hypothetical protein (316 aa)
              0.596
Psed_4009
UspA domain-containing protein (175 aa)
   
          0.565
Psed_2349
ATP-binding protein (137 aa)
   
          0.560
Psed_4045
Cobalamin B12-binding domain-containing protein (357 aa)
   
          0.558
Psed_2314
ATP-binding protein (241 aa)
   
          0.548
Psed_2881
F420-dependent protein (154 aa)
   
          0.547
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (11%) [HD]