STRINGSTRING
Psed_0711 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0711" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0711Hypothetical protein (197 aa)    
Predicted Functional Partners:
Psed_1408
Sulfatase (539 aa)
   
          0.749
Psed_1403
CDP-alcohol phosphatidyltransferase (252 aa)
   
          0.745
Psed_1407
Hypothetical protein (324 aa)
   
          0.709
Psed_1869
Polysaccharide biosynthesis protein CelD (353 aa)
   
          0.696
Psed_0656
Hypothetical protein (230 aa)
   
          0.686
Psed_2393
Gas vesicle protein GvpA (66 aa)
   
          0.650
Psed_5050
Major facilitator superfamily protein (383 aa)
   
          0.594
Psed_0912
ANTAR domain-containing protein (254 aa)
   
          0.592
Psed_2389
Gas vesicle protein GvpG (76 aa)
   
          0.581
Psed_6605
Hypothetical protein (204 aa)
   
          0.578
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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