STRINGSTRING
Psed_0717 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0717" - UspA domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0717UspA domain-containing protein (281 aa)    
Predicted Functional Partners:
Psed_0716
UspA domain-containing protein (304 aa)
 
       
0.895
Psed_4843
UspA domain-containing protein (294 aa)
   
          0.778
Psed_4841
UspA domain-containing protein (289 aa)
   
          0.778
Psed_0709
UspA domain-containing protein (283 aa)
   
          0.778
Psed_0715
GAF sensor signal transduction histidine kinase (547 aa)
 
          0.706
Psed_0713
UspA domain-containing protein (302 aa)
 
          0.702
Psed_2142
Hypothetical protein (144 aa)
   
          0.650
Psed_4840
CBS domain-containing protein (513 aa)
   
          0.596
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (92 aa)
   
          0.590
Psed_5186
NUDIX hydrolase (161 aa)
   
          0.544
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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