STRINGSTRING
Psed_0720 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0720" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0720Hypothetical protein (223 aa)    
Predicted Functional Partners:
Psed_0719
TetR family transcriptional regulator (197 aa)
 
          0.897
Psed_1593
F420-dependent protein (146 aa)
   
          0.637
Psed_4743
Hypothetical protein (71 aa)
   
          0.614
Psed_0718
LuxR family transcriptional regulator (214 aa)
              0.609
Psed_1542
Hypothetical protein (786 aa)
   
          0.595
Psed_3336
Hypothetical protein (179 aa)
   
          0.580
Psed_0287
Hypothetical protein (198 aa)
   
          0.576
Psed_0035
TrwC relaxase (1465 aa)
   
          0.557
Psed_4681
Intradiol ring-cleavage dioxygenase (270 aa)
   
          0.532
Psed_4380
TrwC relaxase (1457 aa)
   
          0.514
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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