STRINGSTRING
Psed_0829 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0829" - TrkA-C domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0829TrkA-C domain-containing protein (160 aa)    
Predicted Functional Partners:
Psed_0828
Sodium/hydrogen exchanger (434 aa)
 
   
  0.974
Psed_0830
Chorismate mutase (201 aa)
              0.689
Psed_0831
O-methyltransferase 2 (329 aa)
              0.667
Psed_3602
Small GTP-binding protein (717 aa)
   
        0.578
Psed_5719
Low temperature requirement A (411 aa)
   
          0.565
Psed_3358
Hypothetical protein (265 aa)
   
          0.551
Psed_0832
LuxR family transcriptional regulator (239 aa)
              0.497
Psed_3129
Hypothetical protein (280 aa)
   
          0.483
Psed_0713
UspA domain-containing protein (302 aa)
   
          0.460
Psed_6595
GTP-binding protein HSR1-like protein (499 aa)
   
          0.446
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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