STRINGSTRING
Psed_0838 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0838" - EmrB/QacA subfamily drug resistance transporter in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0838EmrB/QacA subfamily drug resistance transporter (508 aa)    
Predicted Functional Partners:
Psed_0837
PadR family transcriptional regulator (186 aa)
 
          0.898
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol (323 aa)
     
      0.671
Psed_0840
ABC transporter (596 aa)
              0.644
Psed_3170
Regulatory protein MarR (163 aa)
 
     
  0.520
Psed_0835
Transglycosylase-like domain-containing protein (717 aa)
 
          0.472
Psed_5641
Regulatory protein MarR (182 aa)
         
  0.451
Psed_5104
Regulatory protein MarR (155 aa)
         
  0.451
Psed_4979
MarR family transcriptional regulator (180 aa)
         
  0.451
Psed_4879
MarR family transcriptional regulator (159 aa)
         
  0.451
Psed_4410
Regulatory protein MarR (163 aa)
         
  0.451
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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