STRINGSTRING
Psed_0841 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0841" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0841Hypothetical protein (121 aa)    
Predicted Functional Partners:
Psed_3897
TetR family transcriptional regulator (213 aa)
   
          0.667
Psed_4471
Activator of Hsp90 ATPase 1 family protein (218 aa)
   
          0.638
Psed_1653
Hypothetical protein (434 aa)
   
          0.631
Psed_3002
TetR family transcriptional regulator (141 aa)
   
          0.598
Psed_5232
Hypothetical protein (506 aa)
   
          0.575
Psed_6254
LuxR family transcriptional regulator (542 aa)
   
          0.570
Psed_0840
ABC transporter (596 aa)
              0.564
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol (323 aa)
              0.564
Psed_3108
Hypothetical protein (233 aa)
   
          0.537
Psed_3445
Transcriptional regulator CdaR (562 aa)
   
          0.524
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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