STRINGSTRING
Psed_0842 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0842" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0842Hypothetical protein (144 aa)    
Predicted Functional Partners:
Psed_0843
TetR family transcriptional regulator (185 aa)
 
          0.716
Psed_4407
Hypothetical protein (261 aa)
   
          0.652
Psed_4071
Hypothetical protein (270 aa)
   
          0.644
Psed_4835
Peptidase M48 Ste24p (303 aa)
   
          0.633
Psed_0856
DNA translocase FtsK (678 aa)
   
          0.552
Psed_1127
DNA translocase FtsK (749 aa)
   
          0.544
Psed_2474
TetR family transcriptional regulator (218 aa)
   
          0.526
Psed_5778
DNA translocase FtsK (672 aa)
   
          0.506
Psed_4297
Hypothetical protein (1703 aa)
   
          0.482
Psed_5928
Hypothetical protein (164 aa)
   
          0.472
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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