STRINGSTRING
Psed_0845 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0845" - ABC transporter in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0845ABC transporter (291 aa)    
Predicted Functional Partners:
Psed_0844
Daunorubicin resistance ABC transporter ATPase subunit (326 aa)
  0.998
Psed_0584
Daunorubicin resistance ABC transporter ATPase subunit (338 aa)
  0.958
Psed_0322
Polyamine-transporting ATPase (319 aa)
  0.954
Psed_3645
Polyamine-transporting ATPase (276 aa)
  0.940
Psed_6569
Sulfate-transporting ATPase (345 aa)
  0.900
Psed_1978
Polyamine-transporting ATPase (307 aa)
  0.884
Psed_3401
Fe(3+)-transporting ATPase (318 aa)
  0.873
Psed_0199
Sulfate-transporting ATPase (307 aa)
  0.867
Psed_4497
ABC transporter (315 aa)
  0.856
Psed_2281
ABC transporter (252 aa)
  0.853
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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