STRINGSTRING
Psed_0878 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0878" - Peroxiredoxin in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0878Peroxiredoxin (145 aa)    
Predicted Functional Partners:
Psed_0877
ErfK/YbiS/YcfS/YnhG family protein (154 aa)
   
        0.599
Psed_5004
Ferritin (197 aa)
   
   
  0.535
Psed_3446
Ferritin (198 aa)
   
   
  0.535
Psed_2400
Ferritin (181 aa)
   
   
  0.535
Psed_1422
Ferritin (146 aa)
   
   
  0.535
Psed_6091
Alpha,alpha-trehalose-phosphate synthase (478 aa)
   
   
  0.528
Psed_6092
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose (257 aa)
   
        0.506
Psed_0557
Hypothetical protein (300 aa)
 
          0.500
Psed_4938
MarR family transcriptional regulator (154 aa)
         
  0.498
Psed_1632
MarR family transcriptional regulator (171 aa)
         
  0.498
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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