STRINGSTRING
Psed_0881 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0881" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0881Hypothetical protein (89 aa)    
Predicted Functional Partners:
Psed_0882
Peptidase S41 (1122 aa)
              0.787
Psed_0880
LmbE family protein (224 aa)
              0.701
Psed_4718
ATP dependent DNA ligase (356 aa)
   
        0.602
Psed_2173
NIPSNAP family containing protein (108 aa)
   
          0.592
Psed_0884
ABC transporter membrane protein (250 aa)
              0.567
Psed_0883
ABC transporter (336 aa)
              0.567
Psed_3795
Bifunctional deaminase-reductase domain-containing protein (184 aa)
 
          0.535
Psed_1177
NIPSNAP family containing protein (107 aa)
   
          0.470
Psed_3158
OsmC family protein (172 aa)
   
          0.469
Psed_2150
NIPSNAP family containing protein (112 aa)
   
          0.450
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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