STRINGSTRING
Psed_0923 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0923" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0923Hypothetical protein (156 aa)    
Predicted Functional Partners:
Psed_1865
Parallel beta-helix repeat-containing protein (793 aa)
   
          0.694
Psed_0617
Pentachlorophenol monooxygenase (519 aa)
   
          0.655
Psed_5899
Hypothetical protein (466 aa)
   
          0.648
Psed_0068
Pentachlorophenol monooxygenase (506 aa)
   
          0.607
Psed_4436
Pentachlorophenol monooxygenase (540 aa)
   
          0.590
Psed_2737
Pentachlorophenol monooxygenase (454 aa)
   
          0.589
Psed_0568
Monooxygenase FAD-binding protein (517 aa)
   
          0.586
Psed_3881
Hypothetical protein (421 aa)
   
          0.560
Psed_3654
Monooxygenase FAD-binding protein (495 aa)
   
          0.533
Psed_6626
Pentachlorophenol monooxygenase (521 aa)
   
          0.483
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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