STRINGSTRING
Psed_0947 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0947" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0947Hypothetical protein (203 aa)    
Predicted Functional Partners:
Psed_2823
Abortive infection protein (244 aa)
   
          0.660
Psed_3980
Alanine rich lipoprotein LppW (323 aa)
   
          0.650
Psed_5529
Transcription factor WhiB (94 aa)
   
          0.632
Psed_6103
Hypothetical protein (200 aa)
   
          0.612
Psed_3168
Hypothetical protein (375 aa)
   
          0.601
Psed_0946
Hypothetical protein (671 aa)
              0.589
Psed_3472
Hypothetical protein (152 aa)
   
          0.561
Psed_1141
Bifunctional deaminase-reductase domain-containing protein (211 aa)
   
          0.551
Psed_5919
Polysaccharide deacetylase (265 aa)
   
          0.540
Psed_2613
Coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase (277 aa)
   
          0.533
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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