STRINGSTRING
Psed_0957 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0957" - Diguanylate phosphodiesterase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0957Diguanylate phosphodiesterase (396 aa)    
Predicted Functional Partners:
Psed_4754
Nitrogen regulatory protein P-II (112 aa)
   
 
  0.853
Psed_4753
Nitrogen regulatory protein P-II (127 aa)
   
 
  0.853
Psed_4751
Nitrogen regulatory protein P-II (112 aa)
   
 
  0.853
Psed_0548
PAS/PAC sensor protein (1401 aa)
   
 
  0.762
Psed_6227
LuxR family transcriptional regulator (221 aa)
   
 
  0.704
Psed_5392
LuxR family transcriptional regulator (224 aa)
   
 
  0.704
Psed_5638
Winged helix family two component transcriptional regulator (229 aa)
   
 
  0.698
Psed_5184
Winged helix family two component transcriptional regulator (225 aa)
   
 
  0.698
Psed_5028
Winged helix family two component transcriptional regulator (247 aa)
   
 
  0.698
Psed_0994
Winged helix family two component transcriptional regulator (228 aa)
   
 
  0.698
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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