STRINGSTRING
Psed_0987 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0987" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0987Hypothetical protein (203 aa)    
Predicted Functional Partners:
Psed_0988
Glyoxalase/bleomycin resistance protein/dioxygenase (146 aa)
 
          0.773
Psed_5958
Agarase (371 aa)
   
          0.584
Psed_5329
ATPase AAA (710 aa)
   
          0.572
Psed_0373
TetR family transcriptional regulator (219 aa)
   
          0.561
Psed_1053
GntR family transcriptional regulator (222 aa)
   
          0.560
Psed_5581
Hypothetical protein (178 aa)
   
          0.500
Psed_0986
Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) (355 aa)
              0.500
Psed_5578
LuxR family transcriptional regulator (932 aa)
   
          0.479
Psed_0299
F420-dependent protein (132 aa)
   
          0.463
Psed_0372
Hypothetical protein (167 aa)
   
          0.451
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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