STRINGSTRING
Psed_0991 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0991" - ABC transporter in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0991ABC transporter (326 aa)    
Predicted Functional Partners:
Psed_0992
Hypothetical protein (346 aa)
 
          0.961
Psed_0990
ABC transporter integral membrane protein (283 aa)
 
          0.933
Psed_1980
ABC transporter (277 aa)
 
  0.853
Psed_4965
ABC transporter (272 aa)
  0.847
Psed_3646
ABC transporter (275 aa)
 
  0.845
Psed_6089
ABC transporter (261 aa)
  0.844
Psed_4464
ABC transporter (241 aa)
   
  0.819
Psed_3402
ABC transporter (261 aa)
   
  0.819
Psed_0845
ABC transporter (291 aa)
 
  0.819
Psed_0585
ABC transporter (267 aa)
   
  0.819
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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