STRINGSTRING
Psed_0992 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0992" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0992Hypothetical protein (346 aa)    
Predicted Functional Partners:
Psed_0990
ABC transporter integral membrane protein (283 aa)
 
          0.968
Psed_0991
ABC transporter (326 aa)
 
          0.961
Psed_4498
Hypothetical protein (276 aa)
 
          0.854
Psed_0989
Transcriptional coactivator/pterin dehydratase (98 aa)
              0.767
Psed_3856
Hypothetical protein (343 aa)
   
          0.736
Psed_0995
Histidine kinase (439 aa)
 
          0.654
Psed_4496
Hypothetical protein (375 aa)
   
          0.646
Psed_6562
Hypothetical protein (1018 aa)
   
          0.644
Psed_0832
LuxR family transcriptional regulator (239 aa)
   
          0.642
Psed_5843
Hypothetical protein (245 aa)
   
          0.626
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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