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Psed_1000 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1000" - ABC transporter substrate-binding protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1000ABC transporter substrate-binding protein (634 aa)    
Predicted Functional Partners:
Psed_1003
ABC transporter permease (323 aa)
 
  0.872
Psed_1001
ABC transporter substrate-binding protein (567 aa)
 
   
  0.853
Psed_2188
ABC transporter permease (306 aa)
 
  0.848
Psed_1002
ABC transporter permease (310 aa)
 
 
  0.846
Psed_4648
ABC transporter permease (297 aa)
 
  0.839
Psed_3694
ABC transporter permease (321 aa)
 
  0.836
Psed_1747
ABC transporter permease (283 aa)
 
  0.833
Psed_1353
ABC transporter permease (294 aa)
 
  0.819
Psed_4092
ABC transporter permease (331 aa)
 
  0.814
Psed_6015
ABC transporter permease (320 aa)
 
  0.805
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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