STRINGSTRING
Psed_1003 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1003" - ABC transporter permease in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1003ABC transporter permease (323 aa)    
Predicted Functional Partners:
Psed_1002
ABC transporter permease (310 aa)
  0.983
Psed_1004
Peptide ABC transporter ATPase (704 aa)
   
  0.977
Psed_6018
Peptide ABC transporter ATPase (338 aa)
  0.965
Psed_4647
Peptide ABC transporter ATPase (343 aa)
  0.965
Psed_4089
Peptide ABC transporter ATPase (360 aa)
  0.964
Psed_3693
Peptide ABC transporter ATPase (392 aa)
  0.964
Psed_1001
ABC transporter substrate-binding protein (567 aa)
  0.960
Psed_6014
ABC transporter permease (310 aa)
  0.959
Psed_4649
ABC transporter permease (314 aa)
  0.957
Psed_4090
ABC transporter permease (337 aa)
  0.957
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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