STRINGSTRING
Psed_1029 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1029" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1029Hypothetical protein (236 aa)    
Predicted Functional Partners:
Psed_1028
ECF subfamily RNA polymerase sigma-24 subunit (221 aa)
   
   
  0.901
Psed_6514
Hypothetical protein (225 aa)
   
          0.774
Psed_6674
Hypothetical protein (784 aa)
   
          0.773
Psed_5295
Hypothetical protein (440 aa)
   
          0.770
Psed_5372
Dienelactone hydrolase-like protein (276 aa)
   
          0.769
Psed_1068
Hypothetical protein (417 aa)
   
          0.769
Psed_1086
Hypothetical protein (250 aa)
   
          0.767
Psed_5182
Lipoprotein LpqB, beta-propeller domain-containing protein (570 aa)
   
          0.762
Psed_1019
DivIVA domain-containing protein (312 aa)
   
          0.757
Psed_3284
Hypothetical protein (683 aa)
   
          0.753
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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