STRINGSTRING
Psed_1048 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1048" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1048Hypothetical protein (178 aa)    
Predicted Functional Partners:
Psed_2208
Hypothetical protein (146 aa)
   
          0.724
Psed_1050
ABC transporter permease (319 aa)
 
        0.618
Psed_1051
ABC transporter permease (278 aa)
 
        0.615
Psed_1049
ABC transporter substrate-binding protein (456 aa)
 
        0.604
Psed_1044
MgtE integral membrane protein (436 aa)
 
          0.584
Psed_1043
Hypothetical protein (172 aa)
              0.527
Psed_1022
Hypothetical protein (55 aa)
 
          0.504
Psed_1052
Glycerol-3-phosphate-transporting ATPase (399 aa)
              0.479
Psed_4708
GCN5-like N-acetyltransferase (277 aa)
   
          0.470
Psed_1047
butyryl-CoA dehydrogenase (397 aa)
              0.466
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (7%) [HD]