STRINGSTRING
Psed_1058 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1058" - Type 11 methyltransferase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1058Type 11 methyltransferase (264 aa)    
Predicted Functional Partners:
Psed_3342
Amine oxidase (509 aa)
 
     
  0.876
Psed_1059
Rieske (2Fe-2S) domain-containing protein (330 aa)
 
     
  0.842
Psed_1057
Metallophosphoesterase (215 aa)
              0.649
Psed_1056
Hypothetical protein (279 aa)
              0.649
Psed_2783
Phytoene desaturase (532 aa)
 
     
  0.564
Psed_2781
Phytoene synthase (336 aa)
 
     
  0.497
Psed_4476
Hypothetical protein (131 aa)
   
          0.442
Psed_3678
Squalene-associated FAD-dependent desaturase (477 aa)
         
  0.419
Psed_5297
Hypothetical protein (358 aa)
   
          0.409
Psed_3885
Hypothetical protein (820 aa)
   
          0.408
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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