STRINGSTRING
Psed_1065 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1065" - PHP domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1065PHP domain-containing protein (287 aa)    
Predicted Functional Partners:
Psed_1066
RecB family exonuclease (296 aa)
              0.773
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (238 aa)
          0.752
Psed_1064
Hypothetical protein (178 aa)
              0.726
Psed_1067
Hypothetical protein (97 aa)
              0.709
Psed_1063
Hypothetical protein (52 aa)
              0.686
Psed_3297
Respiratory-chain NADH dehydrogenase domain 51 kDa subunit (626 aa)
     
      0.611
Psed_3807
Pseudouridine synthase (252 aa)
 
 
      0.558
Psed_1062
NUDIX hydrolase (131 aa)
              0.537
Psed_4056
Sua5/YciO/YrdC/YwlC family protein (206 aa)
 
        0.527
Psed_1671
Sua5/YciO/YrdC/YwlC family protein (214 aa)
 
        0.521
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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