STRINGSTRING
Psed_1075 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1075" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1075TetR family transcriptional regulator (273 aa)    
Predicted Functional Partners:
Psed_1074
Flavin binding monooxygenase (102 aa)
              0.884
Psed_1077
Hypothetical protein (299 aa)
 
          0.770
Psed_2142
Hypothetical protein (144 aa)
   
          0.696
Psed_1078
Alpha/beta hydrolase (300 aa)
              0.667
Psed_1073
Hypothetical protein (224 aa)
              0.662
Psed_1076
Short-chain dehydrogenase/reductase SDR (301 aa)
              0.653
Psed_1783
vitamin-B12 independent methionine synthase (421 aa)
   
          0.595
Psed_1072
Hypothetical protein (646 aa)
              0.584
Psed_6172
Acyl dehydratase MaoC (276 aa)
 
     
  0.573
Psed_1022
Hypothetical protein (55 aa)
   
          0.489
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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