STRINGSTRING
Psed_1077 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1077" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1077Hypothetical protein (299 aa)    
Predicted Functional Partners:
Psed_1076
Short-chain dehydrogenase/reductase SDR (301 aa)
 
          0.882
Psed_1078
Alpha/beta hydrolase (300 aa)
              0.864
Psed_1075
TetR family transcriptional regulator (273 aa)
 
          0.770
Psed_1074
Flavin binding monooxygenase (102 aa)
              0.695
Psed_1737
Signal transduction histidine kinase (379 aa)
   
          0.656
Psed_0369
GCN5-like N-acetyltransferase (356 aa)
   
          0.626
Psed_0608
Hypothetical protein (484 aa)
   
          0.615
Psed_0361
Hypothetical protein (405 aa)
   
          0.592
Psed_2877
Hypothetical protein (186 aa)
   
          0.590
Psed_0364
Hypothetical protein (390 aa)
   
          0.581
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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