STRINGSTRING
Psed_1082 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1082" - Alpha/beta hydrolase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1082Alpha/beta hydrolase (364 aa)    
Predicted Functional Partners:
Psed_1083
UBA/THIF-type NAD/FAD binding protein (390 aa)
              0.827
Psed_5059
Alpha/beta hydrolase (266 aa)
   
          0.758
Psed_4129
Alpha/beta hydrolase (261 aa)
   
          0.713
Psed_6465
Alpha/beta hydrolase (271 aa)
   
          0.665
Psed_5053
Alpha/beta hydrolase (276 aa)
   
          0.649
Psed_0823
Alpha/beta hydrolase (194 aa)
   
          0.628
Psed_0622
Alpha/beta hydrolase (270 aa)
   
          0.621
Psed_4327
Alpha/beta hydrolase (286 aa)
   
          0.620
Psed_6034
Alpha/beta hydrolase (260 aa)
   
          0.613
Psed_0418
Soluble epoxide hydrolase (328 aa)
   
          0.609
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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