STRINGSTRING
Psed_1094 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1094" - methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1094methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein (93 aa)    
Predicted Functional Partners:
Psed_1095
Alpha/beta hydrolase (259 aa)
   
        0.854
Psed_1097
UvrD/REP helicase (1224 aa)
 
        0.787
Psed_5701
Hypothetical protein (144 aa)
 
          0.785
Psed_1096
UvrD/REP helicase (1106 aa)
   
        0.742
uvrA
UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate (970 aa)
       
      0.680
Psed_3266
ABC transporter (796 aa)
       
      0.680
Psed_2761
DNA polymerase III subunit epsilon (586 aa)
     
      0.633
uvrC
UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5’ and 3’ sides of the lesion. The N-terminal half is responsible for the 3’ incision and the C-terminal half is responsible for the 5’ incision (742 aa)
     
      0.629
Psed_2920
Acyltransferase (475 aa)
   
          0.552
Psed_5172
Acyltransferase (469 aa)
   
          0.499
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (7%) [HD]