STRINGSTRING
Psed_1099 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1099" - Regulatory protein MarR in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1099Regulatory protein MarR (187 aa)    
Predicted Functional Partners:
Psed_1100
Saccharopine dehydrogenase (371 aa)
              0.845
Psed_1098
DoxX family protein (124 aa)
 
          0.694
Psed_1101
TrkA-N domain-containing protein (352 aa)
              0.677
Psed_3927
Hypothetical protein (192 aa)
   
          0.565
Psed_6349
LuxR family transcriptional regulator (215 aa)
 
 
  0.508
Psed_2991
Type III restriction protein res subunit (576 aa)
   
 
 
  0.493
Psed_3357
Hypothetical protein (288 aa)
   
          0.491
Psed_6192
Hypothetical protein (227 aa)
 
          0.489
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (839 aa)
     
 
  0.474
Psed_2821
LuxR family transcriptional regulator (224 aa)
 
 
  0.468
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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