STRINGSTRING
Psed_1100 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1100" - Saccharopine dehydrogenase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1100Saccharopine dehydrogenase (371 aa)    
Predicted Functional Partners:
Psed_1099
Regulatory protein MarR (187 aa)
              0.845
Psed_6248
Fructose-bisphosphate aldolase (341 aa)
   
 
    0.827
Psed_6239
Fructose-bisphosphate aldolase class-I (337 aa)
   
 
    0.827
Psed_6242
Fructose-bisphosphate aldolase class-I (321 aa)
   
 
    0.826
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner (357 aa)
     
 
    0.805
Psed_1101
TrkA-N domain-containing protein (352 aa)
              0.691
Psed_1098
DoxX family protein (124 aa)
              0.626
Psed_1113
Glutaredoxin-like protein (82 aa)
       
      0.526
Psed_2920
Acyltransferase (475 aa)
   
          0.456
Psed_1999
Winged helix family transcriptional regulator (1107 aa)
   
          0.428
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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