STRINGSTRING
xylA protein (Pseudonocardia dioxanivorans) - STRING interaction network
"xylA" - Xylose isomerase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase (395 aa)    
Predicted Functional Partners:
Psed_1103
Xylulokinase (468 aa)
 
 
  0.994
Psed_3673
Xylulokinase (494 aa)
 
 
  0.954
Psed_5017
Fructokinase (320 aa)
 
   
  0.923
Psed_2974
Phosphoenolpyruvate-protein phosphotransferase (864 aa)
         
  0.901
Psed_1102
ROK family protein (396 aa)
 
     
  0.897
Psed_4402
Glucokinase (342 aa)
       
  0.893
Psed_2772
Glucokinase (332 aa)
       
  0.893
Psed_2995
Monosaccharide-transporting ATPase (376 aa)
 
   
  0.840
Psed_1848
Nucleotide sugar dehydrogenase (441 aa)
         
    0.800
Psed_2997
ABC transporter permease (505 aa)
 
   
  0.795
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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