STRINGSTRING
Psed_1105 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1105" - Exodeoxyribonuclease III in Pseudonocardia dioxanivorans
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second shell of interactors
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filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
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[Homology]
Score
Psed_1105Exodeoxyribonuclease III (289 aa)    
Predicted Functional Partners:
Psed_0002
DNA polymerase III subunit beta; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (376 aa)
   
  0.963
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination, leaving a 3’-terminal unsaturated sugar and a product with a terminal 5’-phosphate (299 aa)
   
  0.961
Psed_6107
HhH-GPD family protein (294 aa)
     
  0.950
Psed_3588
DNA polymerase I (939 aa)
     
  0.944
Psed_4989
DNA ligase D (683 aa)
   
 
  0.909
Psed_3272
DNA polymerase LigD, polymerase domain-containing protein (661 aa)
   
 
  0.909
Psed_3283
5’-3’ exonuclease (312 aa)
     
  0.887
Psed_3144
Histidine kinase (602 aa)
   
 
  0.881
Psed_6303
ATP-dependent DNA ligase (118 aa)
   
 
  0.878
Psed_4718
ATP dependent DNA ligase (356 aa)
   
 
  0.878
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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