STRINGSTRING
Psed_1118 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1118" - ABC transporter in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1118ABC transporter (456 aa)    
Predicted Functional Partners:
Psed_1119
Hypothetical protein (346 aa)
              0.861
menG
Ubiquinone/menaquinone biosynthesis methyltransferase ubiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) (229 aa)
   
 
  0.822
Psed_2769
Cyclase (144 aa)
   
          0.720
Psed_1120
Hypothetical protein (214 aa)
              0.698
Psed_6681
Hypothetical protein (214 aa)
   
          0.672
Psed_0588
Helix-turn-helix domain-containing protein (149 aa)
 
          0.604
Psed_6498
Oxyanion-translocating ATPase (342 aa)
   
        0.602
Psed_2980
Helix-turn-helix domain-containing protein (152 aa)
 
          0.579
Psed_1955
Glutamate synthase (1522 aa)
   
   
  0.577
Psed_0525
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (761 aa)
   
        0.576
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (7%) [HD]