STRINGSTRING
Psed_1119 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1119" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1119Hypothetical protein (346 aa)    
Predicted Functional Partners:
Psed_1118
ABC transporter (456 aa)
              0.861
Psed_4708
GCN5-like N-acetyltransferase (277 aa)
   
          0.681
Psed_1120
Hypothetical protein (214 aa)
              0.625
Psed_3472
Hypothetical protein (152 aa)
   
          0.571
Psed_2986
Hypothetical protein (106 aa)
   
          0.568
Psed_3952
Hypothetical protein (151 aa)
   
          0.524
Psed_1862
Hypothetical protein (177 aa)
   
          0.519
Psed_0589
Hypothetical protein (266 aa)
   
          0.516
Psed_2296
Hypothetical protein (155 aa)
   
          0.511
Psed_6671
Major facilitator superfamily protein (452 aa)
   
          0.482
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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