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Psed_1161 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1161" - LysR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1161LysR family transcriptional regulator (309 aa)    
Predicted Functional Partners:
Psed_1162
Short-chain dehydrogenase/reductase SDR (240 aa)
 
          0.924
Psed_0792
LysR family transcriptional regulator (301 aa)
   
          0.754
Psed_1338
LysR family transcriptional regulator (303 aa)
   
          0.724
Psed_6252
LysR family transcriptional regulator (298 aa)
   
          0.670
Psed_0421
LysR family transcriptional regulator (273 aa)
   
          0.587
Psed_1164
Glyoxalase/bleomycin resistance protein/dioxygenase (129 aa)
              0.565
Psed_1163
Regulatory protein ArsR (97 aa)
              0.565
Psed_2639
LysR family transcriptional regulator (315 aa)
   
          0.562
Psed_1077
Hypothetical protein (299 aa)
   
          0.543
Psed_1743
LysR family transcriptional regulator (285 aa)
   
        0.521
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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