STRINGSTRING
Psed_1170 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1170" - SARP family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1170SARP family transcriptional regulator (252 aa)    
Predicted Functional Partners:
Psed_1171
RNA-binding S4 domain-containing protein (80 aa)
              0.859
Psed_6325
Winged helix family transcriptional regulator (1029 aa)
   
          0.680
Psed_1169
Hypothetical protein (53 aa)
              0.643
Psed_0846
Winged helix family transcriptional regulator (1073 aa)
   
          0.615
Psed_4277
Hypothetical protein (460 aa)
   
          0.533
Psed_0547
Acetoacetate decarboxylase (229 aa)
   
          0.532
Psed_3539
F420-dependent protein (141 aa)
   
          0.505
Psed_0691
Hypothetical protein (179 aa)
   
          0.503
Psed_1168
3-oxoacyl-ACP reductase (287 aa)
              0.494
Psed_4140
Winged helix family transcriptional regulator (992 aa)
   
          0.481
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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