STRINGSTRING
Psed_1184 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1184" - PadR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1184PadR family transcriptional regulator (169 aa)    
Predicted Functional Partners:
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (369 aa)
              0.772
Psed_5118
DNA translocase FtsK (958 aa)
   
          0.753
Psed_1186
Cell division ATP-binding protein FtsE (281 aa)
              0.735
Psed_0165
Hypothetical protein (294 aa)
   
          0.707
Psed_0447
Hypothetical protein (276 aa)
   
          0.693
Psed_6562
Hypothetical protein (1018 aa)
   
          0.678
Psed_4298
Phosphatase (162 aa)
   
          0.659
Psed_6542
Hypothetical protein (220 aa)
   
          0.647
Psed_4476
Hypothetical protein (131 aa)
   
          0.647
Psed_5297
Hypothetical protein (358 aa)
   
          0.643
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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