STRINGSTRING
Psed_1189 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1189" - Amidohydrolase in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
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[Homology]
Score
Psed_1189Amidohydrolase (301 aa)    
Predicted Functional Partners:
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (161 aa)
              0.881
Psed_1187
Hypothetical protein; Part of the ABC transporter FtsEX involved in cellular division (300 aa)
              0.767
Psed_1186
Cell division ATP-binding protein FtsE (281 aa)
              0.654
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (369 aa)
              0.621
Psed_0588
Helix-turn-helix domain-containing protein (149 aa)
   
          0.592
Psed_0486
Glyoxalase/bleomycin resistance protein/dioxygenase (208 aa)
   
          0.569
Psed_1184
PadR family transcriptional regulator (169 aa)
              0.544
Psed_2980
Helix-turn-helix domain-containing protein (152 aa)
   
          0.525
Psed_3392
Guanylate cyclase (315 aa)
   
          0.489
Psed_5633
Aromatic compounds degradation protein PaaI (284 aa)
   
          0.445
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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