STRINGSTRING
Psed_1211 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1211" - Transposase IS111A/IS1328/IS1533 in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1211Transposase IS111A/IS1328/IS1533 (403 aa)    
Predicted Functional Partners:
Psed_1210
Hypothetical protein (330 aa)
              0.514
Psed_2736
Hypothetical protein (226 aa)
   
          0.473
Psed_4224
Polyketide cyclase/dehydrase (168 aa)
   
          0.465
Psed_6409
Hypothetical protein (316 aa)
   
          0.458
Psed_4057
Hypothetical protein (783 aa)
   
          0.447
Psed_0628
Fis family transcriptional regulator (636 aa)
 
          0.428
Psed_1209
DNA methylase N-4/N-6 domain-containing protein (297 aa)
              0.422
Psed_1208
Recombinase (264 aa)
              0.422
Psed_1207
Hypothetical protein (175 aa)
              0.422
Psed_1206
Hypothetical protein (262 aa)
              0.422
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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