STRINGSTRING
Psed_1300 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1300" - Cytochrome c biogenesis protein transmembrane region in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1300Cytochrome c biogenesis protein transmembrane region (288 aa)    
Predicted Functional Partners:
Psed_1301
Redoxin domain-containing protein (176 aa)
 
     
  0.972
Psed_5843
Hypothetical protein (245 aa)
   
          0.654
Psed_1199
Protein-disulfide isomerase-like protein (251 aa)
 
     
  0.568
Psed_1304
Heavy metal translocating P-type ATPase (737 aa)
   
 
  0.531
Psed_5032
Cytochrome c oxidase caa3-type, assembly factor CtaG-like protein (319 aa)
   
          0.531
Psed_1302
Hypothetical protein (116 aa)
              0.500
Psed_6679
Thioredoxin (109 aa)
         
  0.497
Psed_6510
Alkyl hydroperoxide reductase (217 aa)
         
  0.497
Psed_5610
Alkyl hydroperoxide reductase (197 aa)
         
  0.497
Psed_5320
Thioredoxin (116 aa)
         
  0.497
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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