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Psed_1308 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1308" - ECF subfamily RNA polymerase sigma-24 subunit in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1308ECF subfamily RNA polymerase sigma-24 subunit (181 aa)    
Predicted Functional Partners:
Psed_1307
Hypothetical protein (226 aa)
              0.859
Psed_4275
ECF subfamily RNA polymerase sigma-24 subunit (224 aa)
   
          0.777
Psed_1918
ECF subfamily RNA polymerase sigma-24 subunit (311 aa)
   
          0.705
Psed_1306
Hypothetical protein (152 aa)
              0.646
Psed_5625
ECF subfamily RNA polymerase sigma-24 subunit (202 aa)
   
          0.644
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1300 aa)
     
 
  0.582
Psed_6524
ECF subfamily RNA polymerase sigma-24 subunit (244 aa)
   
          0.579
Psed_1309
Hypothetical protein (158 aa)
              0.568
Psed_2444
PDZ/DHR/GLGF domain-containing protein (433 aa)
 
   
  0.557
Psed_3658
ECF subfamily RNA polymerase sigma-24 subunit (348 aa)
   
          0.537
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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