STRINGSTRING
Psed_1370 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1370" - LacI family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1370LacI family transcriptional regulator (343 aa)    
Predicted Functional Partners:
Psed_6093
LacI family transcriptional regulator (365 aa)
   
          0.776
Psed_5017
Fructokinase (320 aa)
 
   
  0.767
Psed_3190
ABC transporter permease (366 aa)
 
   
  0.724
Psed_2957
ABC transporter permease (340 aa)
 
   
  0.708
Psed_1369
Luciferase-like protein (433 aa)
              0.701
Psed_1368
SMP-30/Gluconolaconase/LRE-like region-containing protein (283 aa)
              0.687
Psed_0682
ABC transporter permease (339 aa)
 
   
  0.674
Psed_4170
ABC transporter permease (343 aa)
 
   
  0.654
Psed_4161
ABC transporter permease (371 aa)
 
   
  0.653
Psed_3666
DeoR family transcriptional regulator (264 aa)
 
     
  0.652
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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