STRINGSTRING
Psed_1397 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1397" - TAP domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1397TAP domain-containing protein (530 aa)    
Predicted Functional Partners:
Psed_0608
Hypothetical protein (484 aa)
   
          0.732
Psed_2132
Hypothetical protein (162 aa)
   
          0.728
Psed_0966
Hypothetical protein (217 aa)
   
          0.698
Psed_1398
Integrase catalytic subunit (369 aa)
              0.634
Psed_1723
Metalloprotease-like protein (452 aa)
   
        0.624
Psed_2813
Hypothetical protein (95 aa)
   
          0.616
Psed_5202
Hypothetical protein (120 aa)
   
          0.615
Psed_3053
Hypothetical protein (219 aa)
   
          0.588
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (952 aa)
              0.571
Psed_4557
Hypothetical protein (218 aa)
   
          0.562
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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