STRINGSTRING
Psed_1426 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1426" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1426Hypothetical protein (264 aa)    
Predicted Functional Partners:
Psed_4635
Isocitrate lyase and phosphorylmutase (300 aa)
   
          0.740
Psed_6204
MmgE/PrpD family protein (464 aa)
   
   
  0.648
Psed_4200
MmgE/PrpD family protein (482 aa)
   
   
  0.648
Psed_4110
MmgE/PrpD family protein (466 aa)
   
   
  0.648
Psed_0101
MmgE/PrpD family protein (478 aa)
   
   
  0.648
Psed_6532
Citrate synthase (271 aa)
   
   
  0.603
Psed_0613
Citrate synthase I (434 aa)
   
   
  0.603
Psed_0610
Citrate (Si)-synthase (390 aa)
   
   
  0.603
Psed_5634
Proline dehydrogenase (311 aa)
       
      0.603
Psed_2717
butyrate--CoA ligase (560 aa)
 
   
  0.589
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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