STRINGSTRING
Psed_1465 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1465" - LuxR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1465LuxR family transcriptional regulator (387 aa)    
Predicted Functional Partners:
Psed_1466
Endoribonuclease L-PSP (136 aa)
 
          0.768
Psed_6438
Hemerythrin HHE cation binding domain-containing protein (279 aa)
 
          0.737
Psed_1467
FAD linked oxidase domain-containing protein (453 aa)
 
          0.700
Psed_1377
Polyamine-transporting ATPase (940 aa)
   
          0.578
Psed_3468
Integrase protein (573 aa)
   
          0.556
Psed_6195
TetR family transcriptional regulator (224 aa)
   
          0.515
Psed_0888
Transposase IS4 family protein (466 aa)
   
          0.499
Psed_3531
Ankyrin (504 aa)
   
          0.458
Psed_1673
TetR family transcriptional regulator (228 aa)
   
          0.449
Psed_5987
Hypothetical protein (157 aa)
   
          0.444
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (7%) [HD]